This presentation requires that you have downloaded
and installed MDL's free CHIME software, which in turn requires one of
the following browsers.
Netscape Navigator 3.04
Netscape Communicator (4.0.5 or later for Mac, 4.5 or later for Windows);
there may be problems with Netscape vsersion 6.
For Windows users only: Microsoft Internet Explorer 4.01 or later. There
may be problems with the most recent versions of IE (vs. 5.5 Service Pack
2). There are also problems with using IE on the Mac.
If you meet these software requirements, click below to
Effective viewing or projection of this presentation requires that you
use the mouse to rotate and zoom each view.
CHIME offers a plug-in menu with lots of interesting options (feel free
to explore! In particular, try out "Select>Mouse Picking Action>Distances"
and then click on two atoms in succession to see the distance between them--the
distance should show up at the bottom information bar of your browser window).
To get the pop-up menu
On a Mac, click and hold down the mouse button in the window showing the
structure. (You must do this without moving the mouse; if you move it while
clicking, the structure will rotate, but you won't see the pop-up menu.)
Using Windows, use the right mouse button to get the pop-up menu and the
left mouse button to rotate.
After you start the presentation, you will not load the molecular coordinates
until you select a topic and press the gray square button labelled "<-start
by clicking here".
At the bottom of each page is a "utilities" link. This provides tools for
measuring distances and angles within the structure shown. This is an alternative
to using the pop-up menu described above.
The "color scheme" link is designed for viewing protein structures.
These pages were developed using Rasmol (Macintosh vs. 2.6) and web
page templates, both available from Eric
Martz's Rasmol and CHIME web site at the University of Massachusetts.
I developed and tested them on Power Macintosh computers (older 7600 and
newer iMac) running Netscape Navigator 4.70 with CHIME 2.0a plugin. Please
let me know if you have incompatability
problems on the system you are using. - Rob Scarrow, Haverford College,
November 1999.